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  "Description": "Pmetrics is short for pharmacometrics, the discipline of\nmodeling drug kinetics and effects on biologic systems,\nincluding disease progression. Models can be used to simulate\nnovel therapeutic dosing regimens and/or populations, informing\ntrial design and dosing strategies. The package supports\nprimarily non-parametric but also parametric pharmacometric\nmodeling and simulation with functions to run and analyze the\noutput from all three components of the Pmetrics software suite\nfor population pharmacometric data analysis: 1) IT2B (Iterative\nTwo-Stage Bayesian) for parametric models; 2) NPAG\n(Non-parametric Adaptive Grid) for non-paramametric models; 3)\nSimulator for semi-parametric Monte-Carlo simulations.",
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    },
    {
      "name": "simEx",
      "title": "Example simulator output",
      "object": "simEx",
      "class": [
        "PM_sim",
        "R6"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "ab",
      "title": "Initial range for primary parameter values",
      "topics": [
        "ab"
      ]
    },
    {
      "page": "ab_line",
      "title": "Add lines to plotly plot",
      "topics": [
        "ab_line"
      ]
    },
    {
      "page": "add_renal",
      "title": "Estimate renal function using various equations",
      "topics": [
        "add_renal"
      ]
    },
    {
      "page": "add_shapes",
      "title": "Add shapes to plotly plot",
      "topics": [
        "add_shapes"
      ]
    },
    {
      "page": "add_smooth",
      "title": "Add regression to plotly plot",
      "topics": [
        "add_smooth"
      ]
    },
    {
      "page": "additive",
      "title": "Additive error model",
      "topics": [
        "additive"
      ]
    },
    {
      "page": "all_is_numeric",
      "title": "Check if all values are numeric",
      "topics": [
        "all_is_numeric"
      ]
    },
    {
      "page": "apps",
      "title": "Launch packaged Shiny apps",
      "topics": [
        "apps",
        "lit_sim",
        "pm_plot"
      ]
    },
    {
      "page": "badData",
      "title": "Pmetrics data file with errors",
      "topics": [
        "badData"
      ]
    },
    {
      "page": "cdc_bmi",
      "title": "CDC Pediatric and Adolescent BMI Table",
      "topics": [
        "cdc_bmi"
      ]
    },
    {
      "page": "check_updates",
      "title": "Check for Pmetrics and R updates",
      "topics": [
        "check_updates"
      ]
    },
    {
      "page": "click_plot",
      "title": "Click on plotly plot to highlight traces",
      "topics": [
        "click_plot"
      ]
    },
    {
      "page": "cor2cov",
      "title": "Convert correlation matrix to covariance matrix",
      "topics": [
        "cor2cov"
      ]
    },
    {
      "page": "dataEx",
      "title": "Pmetrics data file",
      "topics": [
        "dataEx"
      ]
    },
    {
      "page": "downloadR",
      "title": "Download the latest platform-specific R installer",
      "topics": [
        "downloadR"
      ]
    },
    {
      "page": "export_plotly",
      "title": "Export plotly plot",
      "topics": [
        "export_plotly"
      ]
    },
    {
      "page": "ger_bmi",
      "title": "CDC Pediatric and Adolescent BMI Table",
      "topics": [
        "ger_bmi"
      ]
    },
    {
      "page": "getCov",
      "title": "Extract covariate information",
      "topics": [
        "getCov"
      ]
    },
    {
      "page": "getDefaultColors",
      "title": "Get a list of default colors",
      "topics": [
        "getDefaultColors"
      ]
    },
    {
      "page": "getFixedColNum",
      "title": "Number of fixed columns",
      "topics": [
        "getFixedColNum"
      ]
    },
    {
      "page": "getPalettes",
      "title": "Get color palette",
      "topics": [
        "getPalettes"
      ]
    },
    {
      "page": "getPMoptions",
      "title": "Get Pmetrics User Options",
      "topics": [
        "getPMoptions"
      ]
    },
    {
      "page": "growth",
      "title": "CDC Pediatric and Adolescent Growth Data Table",
      "topics": [
        "growth"
      ]
    },
    {
      "page": "interp",
      "title": "Model covariate declaration",
      "topics": [
        "interp"
      ]
    },
    {
      "page": "latestR",
      "title": "Get latest platform-specific R release metadata",
      "topics": [
        "latestR"
      ]
    },
    {
      "page": "locales",
      "title": "Pmetrics locales",
      "topics": [
        "locales"
      ]
    },
    {
      "page": "make_AUC",
      "title": "Calculation of AUCs",
      "topics": [
        "makeAUC",
        "make_AUC"
      ]
    },
    {
      "page": "make_NCA",
      "title": "Non-compartmental analysis",
      "topics": [
        "make_NCA"
      ]
    },
    {
      "page": "makeErrorPoly",
      "title": "Assay error polynomial coefficients",
      "topics": [
        "makeErrorPoly"
      ]
    },
    {
      "page": "makePTAtarget",
      "title": "Make a Percent Target Attainment (PTA) Target",
      "topics": [
        "makePTAtarget"
      ]
    },
    {
      "page": "mic1",
      "title": "Example MIC data",
      "topics": [
        "mic1"
      ]
    },
    {
      "page": "model_lib",
      "title": "Model Library",
      "topics": [
        "model_lib"
      ]
    },
    {
      "page": "modEx",
      "title": "Pmetrics model object",
      "topics": [
        "modEx"
      ]
    },
    {
      "page": "msd",
      "title": "Initial mean/SD for primary parameter values",
      "topics": [
        "msd"
      ]
    },
    {
      "page": "mtsknn.eq",
      "title": "Compare discrete distributions",
      "topics": [
        "mtsknn.eq"
      ]
    },
    {
      "page": "NM2PM",
      "title": "Convert NONMEM to Pmetrics Data Files",
      "topics": [
        "NM2PM"
      ]
    },
    {
      "page": "NPex",
      "title": "Example NPAG Output with validation",
      "topics": [
        "NPex"
      ]
    },
    {
      "page": "one_comp_bolus",
      "title": "One-compartment bolus model template",
      "topics": [
        "one_comp_bolus"
      ]
    },
    {
      "page": "one_comp_bolus_cl",
      "title": "One-compartment bolus clearance model template",
      "topics": [
        "one_comp_bolus_cl"
      ]
    },
    {
      "page": "one_comp_iv",
      "title": "One-compartment IV model template",
      "topics": [
        "one_comp_iv"
      ]
    },
    {
      "page": "one_comp_iv_cl",
      "title": "One-compartment IV clearance model template",
      "topics": [
        "one_comp_iv_cl"
      ]
    },
    {
      "page": "opposite_color",
      "title": "Find opposite color with max contrast",
      "topics": [
        "opposite_color"
      ]
    },
    {
      "page": "plot.PM_cov",
      "title": "Plot Pmetrics Covariate objects",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_cov"
      ]
    },
    {
      "page": "plot.PM_cycle",
      "title": "Plot Cycle Information",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_cycle"
      ]
    },
    {
      "page": "plot.PM_cycle_data",
      "title": "Plot PM_cycle_data objects",
      "topics": [
        "plot.PM_cycle_data"
      ]
    },
    {
      "page": "plot.PM_data",
      "title": "Plot PM_data Time-Output Data",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_data"
      ]
    },
    {
      "page": "plot.PM_data_data",
      "title": "Plot method for PM_data data frames",
      "topics": [
        "plot.PM_data_data"
      ]
    },
    {
      "page": "plot.PM_final",
      "title": "Plot Pmetrics Final Cycle Parameter Value Distributions",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_final"
      ]
    },
    {
      "page": "plot.PM_final_data",
      "title": "Plot PM_final_data objects",
      "topics": [
        "plot.PM_final_data"
      ]
    },
    {
      "page": "plot.PM_model",
      "title": "Plot PM_model objects",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_model"
      ]
    },
    {
      "page": "plot.PM_op",
      "title": "Plot Pmetrics Observed vs. Predicted Objects",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_op"
      ]
    },
    {
      "page": "plot.PM_op_data",
      "title": "Plot PM_op_data objects",
      "topics": [
        "plot.PM_op_data"
      ]
    },
    {
      "page": "plot.PM_opt",
      "title": "Plot Pmetrics Multiple-Model Optimal Sampling Objects",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_opt"
      ]
    },
    {
      "page": "plot.PM_pop",
      "title": "Plot PM_pop Prediction Data",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_pop"
      ]
    },
    {
      "page": "plot.PM_post",
      "title": "Plot PM_post Prediction Data",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_post"
      ]
    },
    {
      "page": "plot.PM_pta",
      "title": "Plot PM_pta Percent Target Attainment objects",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_pta"
      ]
    },
    {
      "page": "plot.PM_sim",
      "title": "Plot Pmetrics Simulation Objects",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_sim"
      ]
    },
    {
      "page": "plot.PM_valid",
      "title": "Plot Pmetrics Validation Objects",
      "concept": [
        "PMplots"
      ],
      "topics": [
        "plot.PM_valid"
      ]
    },
    {
      "page": "plot.PMvalid",
      "title": "Plot Pmetrics Validation Objects",
      "topics": [
        "plot.PMvalid"
      ]
    },
    {
      "page": "plotlygg",
      "title": "Convert a plotly object to ggplot",
      "topics": [
        "plotlygg"
      ]
    },
    {
      "page": "PM_build",
      "title": "Build Pmetrics",
      "topics": [
        "PM_build"
      ]
    },
    {
      "page": "PM_compare",
      "title": "Compare runs",
      "topics": [
        "PM_compare"
      ]
    },
    {
      "page": "PM_cov",
      "title": "Contains covariate data",
      "topics": [
        "PM_cov"
      ]
    },
    {
      "page": "PM_cycle",
      "title": "Pmetrics Run Cycle Information",
      "topics": [
        "PM_cycle"
      ]
    },
    {
      "page": "PM_data",
      "title": "Defines the PM_data object",
      "topics": [
        "PM_data"
      ]
    },
    {
      "page": "PM_final",
      "title": "Final Cycle Population Values",
      "topics": [
        "PM_final"
      ]
    },
    {
      "page": "PM_help",
      "title": "Get Help and Report Issues",
      "topics": [
        "PM_help"
      ]
    },
    {
      "page": "PM_load",
      "title": "Load Pmetrics NPAG or IT2B output",
      "topics": [
        "PM_load"
      ]
    },
    {
      "page": "PM_manual",
      "title": "Open user and function manuals. *[Stable]*",
      "topics": [
        "PM_manual"
      ]
    },
    {
      "page": "PM_model",
      "title": "Defines the PM_model class",
      "topics": [
        "PM_model"
      ]
    },
    {
      "page": "PM_op",
      "title": "Observed vs. predicted data",
      "topics": [
        "PM_op"
      ]
    },
    {
      "page": "PM_opt",
      "title": "Optimal Sample Times",
      "topics": [
        "PM_opt"
      ]
    },
    {
      "page": "PM_pop",
      "title": "Population predictions at short intervals",
      "topics": [
        "PM_pop"
      ]
    },
    {
      "page": "PM_post",
      "title": "Individual Bayesian posterior predictions at short intervals",
      "topics": [
        "PM_post"
      ]
    },
    {
      "page": "PM_report",
      "title": "Generate a report",
      "topics": [
        "PM_report"
      ]
    },
    {
      "page": "PM_step",
      "title": "Stepwise covariate-parameter regressions",
      "topics": [
        "PM_step"
      ]
    },
    {
      "page": "PM_tree",
      "title": "Create a new Pmetrics folder tree",
      "topics": [
        "PMtree",
        "PM_tree"
      ]
    },
    {
      "page": "PM_tutorial",
      "title": "Pmetrics tutorial",
      "topics": [
        "PM_tutorial"
      ]
    },
    {
      "page": "PM_valid",
      "title": "Pmetrics validation object",
      "topics": [
        "PM_valid"
      ]
    },
    {
      "page": "PMcheck",
      "title": "Check Pmetrics Inputs for Errors",
      "topics": [
        "PMcheck"
      ]
    },
    {
      "page": "PMmatrixRelTime",
      "title": "Convert Absolute Dates and Times to Relative Hours",
      "topics": [
        "PMmatrixRelTime"
      ]
    },
    {
      "page": "PMpatch",
      "title": "Download and install Pmetrics patches",
      "topics": [
        "PMpatch"
      ]
    },
    {
      "page": "PMreadMatrix",
      "title": "Read a Pmetrics data file",
      "topics": [
        "PMreadMatrix"
      ]
    },
    {
      "page": "PMtest",
      "title": "Test Pmetrics",
      "topics": [
        "PMtest"
      ]
    },
    {
      "page": "PMwriteMatrix",
      "title": "Write a Pmetrics .csv Matrix File",
      "topics": [
        "PMwriteMatrix"
      ]
    },
    {
      "page": "PMwrk2csv",
      "title": "Convert Old .wrk Files to .csv Matrix File",
      "topics": [
        "PMwrk2csv"
      ]
    },
    {
      "page": "print.PM_compare",
      "title": "Print method for PM_compare objects",
      "topics": [
        "print.PM_compare"
      ]
    },
    {
      "page": "print.PMerr",
      "title": "Print Data Errors",
      "topics": [
        "print.PMerr"
      ]
    },
    {
      "page": "print.PMnpc",
      "title": "Print NPC",
      "topics": [
        "print.PMnpc"
      ]
    },
    {
      "page": "print.summary.PM_cycle",
      "title": "Print Summary of Cycle Statistics",
      "topics": [
        "print.summary.PM_cycle"
      ]
    },
    {
      "page": "print.summary.PM_data",
      "title": "Print Summary of Pmetrics Data",
      "topics": [
        "print.summary.PM_data"
      ]
    },
    {
      "page": "print.summary.PM_final",
      "title": "Print Summary of Parameter Values and Credibility Intervals",
      "topics": [
        "print.summary.PM_final"
      ]
    },
    {
      "page": "print.summary.PM_op",
      "title": "Print Summary of Observations and Predictions",
      "topics": [
        "print.summary.PM_op"
      ]
    },
    {
      "page": "print.summary.PM_sim",
      "title": "Print Summary of Simulations",
      "topics": [
        "print.summary.PM_sim"
      ]
    },
    {
      "page": "proportional",
      "title": "Proportional error model",
      "topics": [
        "proportional"
      ]
    },
    {
      "page": "qgrowth",
      "title": "Extract CDC pediatric growth charts",
      "topics": [
        "qgrowth"
      ]
    },
    {
      "page": "rgba_to_rgb",
      "title": "Convert RGBA to RGB",
      "topics": [
        "rgba_to_rgb"
      ]
    },
    {
      "page": "setPMoptions",
      "title": "Set Pmetrics User Options",
      "topics": [
        "setPMoptions"
      ]
    },
    {
      "page": "simEx",
      "title": "Example simulator output",
      "topics": [
        "simEx"
      ]
    },
    {
      "page": "ss.PK",
      "title": "Sample size calculations for Phase 1 PK study design",
      "topics": [
        "ss.PK"
      ]
    },
    {
      "page": "sub_plot",
      "title": "Display multiple plotly plots",
      "topics": [
        "sub_plot"
      ]
    },
    {
      "page": "summary.PM_cov",
      "title": "Summarize Covariates and Bayesian Posterior Parameter Values",
      "topics": [
        "summary.PM_cov"
      ]
    },
    {
      "page": "summary.PM_cycle",
      "title": "Summarize Final Cycle Statistics",
      "topics": [
        "summary.PM_cycle"
      ]
    },
    {
      "page": "summary.PM_cycle_data",
      "title": "Summarize PM_cycle_data objects",
      "topics": [
        "summary.PM_cycle_data"
      ]
    },
    {
      "page": "summary.PM_data",
      "title": "Summarize PM_data objects",
      "topics": [
        "summary.PM_data"
      ]
    },
    {
      "page": "summary.PM_final",
      "title": "Summary Statistics for Final Cycle",
      "topics": [
        "summary.PM_final"
      ]
    },
    {
      "page": "summary.PM_final_data",
      "title": "Summarize PM_final_data objects",
      "topics": [
        "summary.PM_final_data"
      ]
    },
    {
      "page": "summary.PM_op",
      "title": "Summarize Observations and Predictions",
      "topics": [
        "summary.PM_op"
      ]
    },
    {
      "page": "summary.PM_op_data",
      "title": "Summarize PM_op_data objects",
      "topics": [
        "summary.PM_op_data"
      ]
    },
    {
      "page": "summary.PM_pop",
      "title": "Summarize Observations and Predictions",
      "topics": [
        "summary.PM_pop"
      ]
    },
    {
      "page": "summary.PM_post",
      "title": "Summarize Observations and Predictions",
      "topics": [
        "summary.PM_post"
      ]
    },
    {
      "page": "summary.PM_pta",
      "title": "Summarize Percent Target Attainment",
      "topics": [
        "summary.PM_pta"
      ]
    },
    {
      "page": "summary.PM_sim",
      "title": "Summarize Pmetrics Simulation Objects",
      "topics": [
        "summary.PM_sim"
      ]
    },
    {
      "page": "summary.PM_valid",
      "title": "Summary Method for PM_valid Objects",
      "topics": [
        "summary.PM_valid"
      ]
    },
    {
      "page": "three_comp_bolus",
      "title": "Three-compartment bolus model template",
      "topics": [
        "three_comp_bolus"
      ]
    },
    {
      "page": "three_comp_bolus_cl",
      "title": "Three-compartment bolus clearance model template",
      "topics": [
        "three_comp_bolus_cl"
      ]
    },
    {
      "page": "three_comp_iv",
      "title": "Three-compartment IV model template",
      "topics": [
        "three_comp_iv"
      ]
    },
    {
      "page": "three_comp_iv_cl",
      "title": "Three-compartment IV clearance model template",
      "topics": [
        "three_comp_iv_cl"
      ]
    },
    {
      "page": "two_comp_bolus",
      "title": "Two-compartment bolus model template",
      "topics": [
        "two_comp_bolus"
      ]
    },
    {
      "page": "two_comp_bolus_cl",
      "title": "Two-compartment bolus clearance model template",
      "topics": [
        "two_comp_bolus_cl"
      ]
    },
    {
      "page": "two_comp_iv",
      "title": "Two-compartment IV model template",
      "topics": [
        "two_comp_iv"
      ]
    },
    {
      "page": "two_comp_iv_cl",
      "title": "Two-compartment IV clearance model template",
      "topics": [
        "two_comp_iv_cl"
      ]
    },
    {
      "page": "zBMI",
      "title": "Extract CDC pediatric BMI z-scores",
      "topics": [
        "zBMI"
      ]
    }
  ],
  "_readme": "https://github.com/LAPKB/Pmetrics/raw/v3.1.3/README.md",
  "_rundeps": [
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    "askpass",
    "autocogs",
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    "tzdb",
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